Upload essd_scripts/reproduce_manuscript_outputs.sh

essd_scripts/reproduce_manuscript_outputs.sh

@@ -7,19 +7,19 @@ OUTDIR="${1:-$ROOT/essd_scripts/outputs}"
 cd "$ROOT"
 mkdir -p "$OUTDIR"
 
-echo "[1/6] Audit manuscript numbers"
+echo "[1/7] Audit manuscript numbers"
 python essd_scripts/audit_manuscript_numbers.py --format text \
   | tee "$OUTDIR/manuscript_number_audit.txt"
 
-echo "[2/6] Export machine-readable audit report"
+echo "[2/7] Export machine-readable audit report"
 python essd_scripts/audit_manuscript_numbers.py --format json \
   > "$OUTDIR/manuscript_number_audit.json"
 
-echo "[3/6] Export baseline-validation table rows"
+echo "[3/7] Export baseline-validation table rows"
 python essd_scripts/audit_manuscript_numbers.py --format latex-baseline \
   > "$OUTDIR/baseline_validation_rows.tex"
 
-echo "[4/6] Check manuscript-number consistency"
+echo "[4/7] Check manuscript-number consistency"
 if [[ -f "$ROOT/essd/template.tex" ]]; then
   python essd_scripts/check_manuscript_consistency.py --format text \
     | tee "$OUTDIR/manuscript_consistency_check.txt"
@@ -30,14 +30,17 @@ else
     | tee "$OUTDIR/manuscript_consistency_check.txt"
 fi
 
-echo "[5/6] Rebuild dataset overview figure"
+echo "[5/7] Rebuild dataset overview figure"
 python essd_scripts/plot_dataset_overview.py \
   --label-json data/label/annotations_for_continuous_hdf5.json \
   --waveform-db data/index/waveform_index.sqlite \
   --h5-dir data/hdf5 \
   --out figures/dataset_overview.pdf
 
-echo "[6/6] Rebuild ESSD QC and appendix figures"
+echo "[6/7] Rebuild monitoring-regime characterization figure"
+python essd_scripts/plot_monitoring_regime_characterization.py
+
+echo "[7/7] Rebuild ESSD QC and appendix figures"
 python essd_scripts/plot_essd_qc_figures.py
 
 echo "[OK] Manuscript audit outputs: $OUTDIR"