Upload essd_scripts/run_paired_diagnostics_all.py

essd_scripts/run_paired_diagnostics_all.py

@@ -0,0 +1,105 @@
+#!/usr/bin/env python3
+"""Run paired snippet/stream diagnostics for all released picker outputs."""
+
+from __future__ import annotations
+
+import argparse
+import csv
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+
+PICKERS = [
+    ("lppnm", "data/picks/lppnm.phase.jsonl", "eval_picks/eval_lppnm"),
+    ("phasenet", "data/picks/phasenet.pick.jsonl", "eval_picks/eval_phasenet"),
+    ("pnsn_v1", "data/picks/pnsn_v1.phase.jsonl", "eval_picks/eval_pnsn_v1"),
+    ("pnsn_v3_5120", "data/picks/pnsn_v3_5120.phase.jsonl", "eval_picks/eval_pnsn_v3_5120"),
+    ("pnsn_v3_diff", "data/picks/pnsn.v3.diff.phase.jsonl", "eval_picks/eval_pnsn_v3_diff"),
+    ("seismicxm", "data/picks/seismicxm.01.phase.jsonl", "eval_picks/eval_seismicxm"),
+    ("seist", "data/picks/seist.phase.jsonl", "eval_picks/eval_seist"),
+    ("skynet", "data/picks/skynet.phase.jsonl", "eval_picks/eval_skynet"),
+    ("ustc_sc", "data/picks/ustc_sc.phase.jsonl", "eval_picks/eval_ustc_sc"),
+]
+
+
+def main() -> None:
+    parser = argparse.ArgumentParser(description=__doc__)
+    root = Path(__file__).resolve().parents[1]
+    parser.add_argument("--root", type=Path, default=root)
+    parser.add_argument("--outdir", type=Path, default=root / "paired_eval_all")
+    parser.add_argument("--label-json", type=Path, default=root / "data/label/annotations_for_continuous_hdf5.json")
+    parser.add_argument("--half-width-s", nargs="+", default=["5", "10", "30", "60"])
+    parser.add_argument("--only", nargs="*", default=None, help="Optional picker names to run.")
+    args = parser.parse_args()
+
+    args.outdir.mkdir(parents=True, exist_ok=True)
+    script = args.root / "essd_scripts/paired_snippet_stream_diagnostic.py"
+
+    selected = PICKERS
+    if args.only:
+        keep = set(args.only)
+        selected = [item for item in PICKERS if item[0] in keep]
+        missing = sorted(keep - {item[0] for item in selected})
+        if missing:
+            raise SystemExit(f"unknown picker name(s): {', '.join(missing)}")
+
+    for name, auto_jsonl, eval_dir in selected:
+        out = args.outdir / name
+        cmd = [
+            sys.executable,
+            str(script),
+            "--auto-jsonl",
+            str(args.root / auto_jsonl),
+            "--matches-jsonl",
+            str(args.root / eval_dir / "matches.jsonl"),
+            "--summary-json",
+            str(args.root / eval_dir / "summary.json"),
+            "--label-json",
+            str(args.label_json),
+            "--outdir",
+            str(out),
+            "--half-width-s",
+            *args.half_width_s,
+        ]
+        print(f"[RUN] {name}", flush=True)
+        subprocess.run(cmd, check=True)
+
+    combined = []
+    for name, _auto_jsonl, _eval_dir in selected:
+        p = args.outdir / name / "paired_snippet_stream_summary.json"
+        data = json.loads(p.read_text(encoding="utf-8"))
+        for row in data["rows"]:
+            combined.append({"picker": name, **row})
+
+    json_path = args.outdir / "combined_paired_snippet_stream_summary.json"
+    json_path.write_text(json.dumps(combined, indent=2), encoding="utf-8")
+
+    fields = [
+        "picker",
+        "mode",
+        "n_label_with_waveform",
+        "n_tp_with_waveform",
+        "coverage_aware_recall",
+        "automatic_picks",
+        "automatic_picks_per_day",
+        "catalog_relative_explained_fraction",
+        "automatic_picks_per_covered_tp",
+        "selected_window_seconds_station_time",
+        "n_residual",
+        "abs_p95_s",
+        "tail_gt_1p5_fraction",
+    ]
+    tsv_path = args.outdir / "combined_paired_snippet_stream_summary.tsv"
+    with tsv_path.open("w", encoding="utf-8", newline="") as f:
+        writer = csv.DictWriter(f, fieldnames=fields, delimiter="\t", extrasaction="ignore")
+        writer.writeheader()
+        writer.writerows(combined)
+
+    print(f"[OUT] {json_path}")
+    print(f"[OUT] {tsv_path}")
+
+
+if __name__ == "__main__":
+    main()