Rename pooling offset columns
Browse files
README.md
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@@ -79,7 +79,7 @@ the column as shown above.
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| `chrom`, `start`, `end`, `strand` | Zero-based, half-open hg38 feature/control coordinates. |
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| `context_start`, `context_end` | Forward-genome coordinates of `sequence`. |
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| `roi_start`, `roi_end` | Feature/control offsets within `sequence`. |
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| `
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| `name` | Source annotation name. |
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| `phylop_mean`, `phylop_std` | Mean and population standard deviation over GAMBA's baseline ROI. |
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| `phylop_frac_pos`, `phylop_frac_neg` | Fractions of ROI bases with positive or negative phyloP scores. |
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| 79 |
| `chrom`, `start`, `end`, `strand` | Zero-based, half-open hg38 feature/control coordinates. |
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| 80 |
| `context_start`, `context_end` | Forward-genome coordinates of `sequence`. |
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| 81 |
| `roi_start`, `roi_end` | Feature/control offsets within `sequence`. |
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| `pool_start_in_window`, `pool_end_in_window` | Offsets to pool for representation evaluation. |
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| `name` | Source annotation name. |
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| `phylop_mean`, `phylop_std` | Mean and population standard deviation over GAMBA's baseline ROI. |
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| `phylop_frac_pos`, `phylop_frac_neg` | Fractions of ROI bases with positive or negative phyloP scores. |
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functional-random-gamba-bidi.parquet
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version https://git-lfs.github.com/spec/v1
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size 130137495
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functional-random-gamba-causal.parquet
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version https://git-lfs.github.com/spec/v1
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size 122834484
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