Rename pooling offset columns

README.md

@@ -37,7 +37,7 @@ is an annotated feature labeled by its functional category.
 
 The full-region and 100 bp pooling variants are separate Hugging Face configs.
 Each pooling variant has causal and bidirectional context configs.
-`pool_start` and `pool_end` select either the complete ROI or a deterministic
+`pool_start_in_window` and `pool_end_in_window` select either the complete ROI or a deterministic
 100 bp subspan. ROIs shorter than 100 bp are absent from the 100 bp configs.
 
 GAMBA's evaluator selects the 100 bp subspan using Python's process-randomized
@@ -97,7 +97,7 @@ the column as shown above.
 | `chrom`, `start`, `end`, `strand` | Zero-based, half-open hg38 feature coordinates. |
 | `context_start`, `context_end` | Forward-genome coordinates of `sequence`. |
 | `roi_start`, `roi_end` | Full feature offsets within `sequence`. |
-| `pool_start`, `pool_end` | Full-ROI or fixed 100 bp pooling span. |
+| `pool_start_in_window`, `pool_end_in_window` | Full-ROI or fixed 100 bp pooling span. |
 | `name` | Source annotation name. |
 | `phylop_mean`, `phylop_std` | Mean and population standard deviation over GAMBA's baseline ROI or fixed 100 bp span. |
 | `phylop_frac_pos`, `phylop_frac_neg` | Fractions of pooled bases with positive or negative phyloP scores. |

functional-multiclass-gamba-100bp-bidi.parquet

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functional-multiclass-gamba-100bp-causal.parquet

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functional-multiclass-gamba-full-bidi.parquet

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functional-multiclass-gamba-full-causal.parquet

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