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README.md

@@ -1,6 +1,6 @@
 ---
 pretty_name: "GAMBA ATG Contexts"
-license: mit
+license: other
 tags:
 - biology
 - genomics
@@ -109,7 +109,8 @@ not a supervised train/test dataset.
 | `pair_id` | Shared by the five sites from one transcript example. |
 | `category`, `scope` | Constant `ATG` category and `roi` pooling scope. |
 | `context_policy` | `causal` or `symmetric`. |
-| `chrom`, `start`, `end`, `strand` | Zero-based, half-open hg38 three-base site coordinates. |
+| `chrom`, `start`, `end`, `source_strand` | Zero-based, half-open hg38 site coordinates and biological strand. |
+| `sequence_orientation` | Explicit `+`/`-` orientation used for sequence geometry and reverse complementation. |
 | `context_start`, `context_end` | Forward-genome coordinates represented by `sequence`. |
 | `roi_start`, `roi_end` | Three-base site offsets in the strand-oriented sequence. |
 | `pool_start_in_window`, `pool_end_in_window` | Exact representation-pooling span; identical to the three-base ROI. |
@@ -137,7 +138,7 @@ The source TSV reconciliation, transcript sampling, context construction,
 phyloP calculation, output hashes, and exact reference comparison are
 available at:
 
-https://github.com/TaykhoomDalal/Gamba-Processing/tree/main/ATG
+https://github.com/TaykhoomDalal/Gamba-Processing/commit/549985683a1c52014a64c5781937dd25360f1553
 
 ## Citation
 
@@ -147,5 +148,7 @@ https://doi.org/10.64898/2026.02.02.703275
 
 ## License
 
-GAMBA and its released benchmark code/data are distributed under the MIT
-license. Upstream annotation and reference resources retain their own terms.
+The processing code derived from GAMBA is MIT licensed under the processing
+repository's `LICENSE`. This generated dataset is marked `other`: incorporated
+reference sequence, annotations, and phyloP-derived values retain their
+upstream terms, so no blanket MIT license is asserted for the Parquets.

atg-gamba-bidi.parquet

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atg-gamba-causal.parquet

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