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| 1 |
+
# Scandium-Dataset Paper Outline
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| 2 |
+
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| 3 |
+
**Target Venues** (in priority order):
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| 4 |
+
1. NeurIPS Datasets & Benchmarks (if benchmark experiments are the core contribution)
|
| 5 |
+
2. Scientific Data (if curation methodology is the core contribution)
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| 6 |
+
3. npj Computational Materials (if materials science insight is the core contribution)
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| 7 |
+
4. J. Chem. Inf. Model. (domain-specific data resource)
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| 8 |
+
|
| 9 |
+
---
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| 10 |
+
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| 11 |
+
## Title
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| 12 |
+
|
| 13 |
+
**Scandium: A Curated Multi-Source Dataset with Quality Tiering for ML-Driven Solid-State Battery Discovery**
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| 14 |
+
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| 15 |
+
---
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| 16 |
+
|
| 17 |
+
## Authors
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| 18 |
+
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| 19 |
+
Scandium Labs (individual names if available)
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| 20 |
+
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| 21 |
+
---
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| 22 |
+
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| 23 |
+
## Abstract (draft)
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| 24 |
+
|
| 25 |
+
*We introduce Scandium-Dataset, a unified computational materials dataset of 266,732 DFT-computed entries aggregated from Materials Project, OQMD, and JARVIS-DFT. Unlike prior harmonization efforts, Scandium implements a calibrated 4-tier quality system (Strict Gold / Gold / Validated / Raw) with per-entry provenance tracking, 31,997 duplicates removed, and 137,405 repaired structures. We provide frozen benchmark splits across four held-out strategies (random, composition, family, chemistry), enabling reproducible evaluation of generalization to unseen compositions and material families. Baseline experiments with a composition-only model show that training on Gold-tier data (96,242 entries) consistently outperforms training on the full dataset, achieving FE MAE of 0.298 vs 0.392 on random splits and 1.384 vs 1.657 on chemistry held-out splits — validating the tiering strategy. Battery (82,925 entries) and electrolyte (41,665 entries) subsets are provided for domain-specific applications. The dataset is released with full documentation, audit reports, and known limitations. All code and data are publicly available.*
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| 26 |
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| 27 |
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---
|
| 28 |
+
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| 29 |
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## 1. Introduction
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| 30 |
+
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| 31 |
+
### Problem Statement
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| 32 |
+
- Solid-state battery discovery is bottlenecked by slow DFT screening
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| 33 |
+
- ML acceleration requires high-quality, well-characterized training data
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| 34 |
+
- Existing data is scattered (MP, OQMD, JARVIS differ in schema, quality, conventions)
|
| 35 |
+
|
| 36 |
+
### Gaps in Prior Work
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| 37 |
+
- Prior harmonization (LeMat-Traj) unifies schema but doesn't tier by quality
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| 38 |
+
- Existing benchmarks (Matbench) use single-source data and lack OOD splits
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| 39 |
+
- Battery-specific datasets (Electrolyte Genome) are small and experimental-only
|
| 40 |
+
|
| 41 |
+
### Contributions (numbered)
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| 42 |
+
1. Multi-source unification with 4-tier quality system and 11 validation gates
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| 43 |
+
2. Cross-source agreement quantification and systematic bias documentation
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| 44 |
+
3. Battery/electrolyte classification methodology with 10 material families
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| 45 |
+
4. Frozen benchmark splits (4 types) with OOD held-out configurations
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| 46 |
+
5. Baseline experiments validating the tiering system
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| 47 |
+
|
| 48 |
+
---
|
| 49 |
+
|
| 50 |
+
## 2. Related Work
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| 51 |
+
|
| 52 |
+
(Expand from [related_work.md](related_work.md))
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| 53 |
+
|
| 54 |
+
- **Materials databases:** MP, OQMD, JARVIS, AFLOW, NOMAD
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| 55 |
+
- **Harmonized datasets:** LeMat-Traj (closest prior art — explicit comparison table)
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| 56 |
+
- **Benchmarks:** Matbench, JARVIS-Leaderboard
|
| 57 |
+
- **Battery-specific:** Electrolyte Genome, BatteryHub
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| 58 |
+
- **Novelty positioning:** Tiering methodology + battery curation + OOD splits
|
| 59 |
+
|
| 60 |
+
---
|
| 61 |
+
|
| 62 |
+
## 3. Curation Methodology
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| 63 |
+
|
| 64 |
+
### 3.1 Source Selection
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| 65 |
+
- Why MP, OQMD, JARVIS? Coverage, complementarity, license variation
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| 66 |
+
- Extraction dates, API versions pinned for reproducibility
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| 67 |
+
|
| 68 |
+
### 3.2 Schema Unification
|
| 69 |
+
- Field mapping across sources
|
| 70 |
+
- Unit normalization
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| 71 |
+
- Structure standardization (pymatgen JSON)
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| 72 |
+
|
| 73 |
+
### 3.3 Deduplication
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| 74 |
+
- 31,997 duplicates removed across 21,140 groups
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| 75 |
+
- Structure matching method (pymatgen StructureMatcher)
|
| 76 |
+
- Priority rules for choosing which entry to keep
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| 77 |
+
|
| 78 |
+
### 3.4 Repair Pipeline
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| 79 |
+
- OQMD coordinate artifacts (137,405 entries): `coords_are_cartesian=False`
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| 80 |
+
- OQMD space group determination (171,764 entries): spglib symmetry pass
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| 81 |
+
- Volume/density repair (73,480 entries): extraction from structure_json
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| 82 |
+
- JARVIS volume extraction (25,673 entries)
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| 83 |
+
|
| 84 |
+
### 3.5 Quality Scoring
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| 85 |
+
- 5 sub-scores (geometry, DFT, metadata, novelty, chemical)
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| 86 |
+
- Composite score range: 48–88 (intentionally conservative)
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| 87 |
+
- Calibration: score 80-90 predicts 85.2% validation rate, 0.18 eV FE MAE
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| 88 |
+
|
| 89 |
+
### 3.6 Tiering System
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| 90 |
+
- 4 tiers with cumulative gates:
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| 91 |
+
- Strict Gold (56,966): 11 gates, quality ≥ 80, full provenance, no defects
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| 92 |
+
- Gold (96,242): 8 gates, validated + unique + stable + complete metadata
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| 93 |
+
- Validated (140,382): 5 gates, valid structure + targets + no critical issues
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| 94 |
+
- Raw (30,108): source + formula present
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| 95 |
+
- Gate definitions and pass/fail criteria for each tier
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| 96 |
+
|
| 97 |
+
### 3.7 Provenance Tracking
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| 98 |
+
- Per-entry checksum, repair history, tier gate results, dedup resolution
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| 99 |
+
- Enables auditability and reproducibility
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| 100 |
+
|
| 101 |
+
### 3.8 Material Family Classification
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| 102 |
+
- 10 families based on element composition
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| 103 |
+
- Family distribution and battery relevance assessment
|
| 104 |
+
- Known issue: garnet undercount (23 entries)
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| 105 |
+
|
| 106 |
+
---
|
| 107 |
+
|
| 108 |
+
## 4. Dataset Analysis
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| 109 |
+
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| 110 |
+
### 4.1 Overall Statistics
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| 111 |
+
(Table: entries per source, per tier, per family)
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| 112 |
+
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| 113 |
+
### 4.2 Property Distributions
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| 114 |
+
(Figures: FE, EaH, BG histograms by source and tier)
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| 115 |
+
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| 116 |
+
### 4.3 Cross-Source Agreement
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| 117 |
+
- 11,741 formulas overlapping between MP and JARVIS
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| 118 |
+
- FE MAE across overlaps: 0.20 eV/atom
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| 119 |
+
- Source-level biases documented (MP mean quality 87.4 vs OQMD 73.2)
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| 120 |
+
|
| 121 |
+
### 4.4 Quality Score Calibration
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| 122 |
+
- Monotonic relationship between score and downstream prediction error
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| 123 |
+
- Figure: score bin → validation rate, FE MAE, EaH MAE
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| 124 |
+
|
| 125 |
+
### 4.5 Tier Impact Analysis
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| 126 |
+
- Outlier removal effectiveness (Gold excludes 42 extreme-FE OQMD entries)
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| 127 |
+
- Defect distribution by tier
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| 128 |
+
- Missing data analysis (EaH for JARVIS: 100% missing by source limitation)
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| 129 |
+
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| 130 |
+
### 4.6 Battery and Electrolyte Subset Statistics
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| 131 |
+
(Per-family breakdown, tier distribution within subsets)
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| 132 |
+
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| 133 |
+
---
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| 134 |
+
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| 135 |
+
## 5. Benchmark Baselines
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| 136 |
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| 137 |
+
### 5.1 Experimental Setup
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| 138 |
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- 4 split types (random, composition-held-out, family-held-out, chemistry-held-out)
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| 139 |
+
- 2 training configurations (full dataset vs Gold-tier only)
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| 140 |
+
- 8 experiments total
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| 141 |
+
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| 142 |
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### 5.2 Model
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| 143 |
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- Composition-only: bag-of-elements + RF + Ridge ensemble
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| 144 |
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- Rationale: fast, reproducible, structure-agnostic lower bound
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| 145 |
+
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| 146 |
+
### 5.3 Results
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| 147 |
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| 148 |
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**Key table (8 rows):**
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| 149 |
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| 150 |
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| Training Data | Split | FE MAE | EaH MAE | BG MAE |
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| 151 |
+
|---------------|-------|--------|---------|--------|
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| 152 |
+
| Full | random | 0.392 | 0.224 | 0.494 |
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| 153 |
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| Gold | random | **0.298** | **0.024** | 0.762 |
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| 154 |
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| Full | composition | 0.390 | 0.223 | 0.497 |
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| 155 |
+
| Gold | composition | **0.306** | **0.024** | 0.772 |
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| 156 |
+
| Full | family | 0.739 | 0.169 | 1.105 |
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| 157 |
+
| Gold | family | **0.458** | **0.019** | 0.943 |
|
| 158 |
+
| Full | chemistry | 1.657 | 0.355 | 1.966 |
|
| 159 |
+
| Gold | chemistry | **1.384** | **0.027** | 2.129 |
|
| 160 |
+
|
| 161 |
+
### 5.4 Analysis
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| 162 |
+
- **Gold-tier training consistently beats full-dataset** on FE and EaH despite 3× less data
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| 163 |
+
- **EaH dramatically benefits** from Gold filtering (excludes JARVIS with no EaH, filters OQMD outliers)
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| 164 |
+
- **Chemistry held-out is hardest** — negative R² for both configurations
|
| 165 |
+
- **Band gap trade-off** — Gold has fewer metals (BG=0), making BG prediction harder
|
| 166 |
+
- **Per-family analysis** reveals model weaknesses (intermetallic bias, garnet data scarcity)
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| 167 |
+
|
| 168 |
+
### 5.5 Discussion
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| 169 |
+
- The tiering system is empirically validated: cleaner data beats more data
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| 170 |
+
- OOD splits reveal limits of composition-only models
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| 171 |
+
- Roadmap for structure-aware models (CGCNN, MEGNet, ALIGNN)
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| 172 |
+
|
| 173 |
+
---
|
| 174 |
+
|
| 175 |
+
## 6. Limitations
|
| 176 |
+
|
| 177 |
+
(Lift directly from [KNOWN_ISSUES.md](../KNOWN_ISSUES.md))
|
| 178 |
+
|
| 179 |
+
- JARVIS EaH missing (25,673 entries) — fundamental source limitation
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| 180 |
+
- MP vs OQMD quality score gap (87.4 vs 73.2 mean)
|
| 181 |
+
- Family imbalance (~63% intermetallics)
|
| 182 |
+
- Garnet family undercount (23 entries)
|
| 183 |
+
- No experimental validation — purely computational
|
| 184 |
+
- License complexity — 3 different licenses across sources
|
| 185 |
+
- Conservative quality scoring (max score: 88)
|
| 186 |
+
- No Docker container (since resolved in v0.1.0-rc.1)
|
| 187 |
+
- No DOI assigned yet (Zenodo archival in progress)
|
| 188 |
+
|
| 189 |
+
---
|
| 190 |
+
|
| 191 |
+
## 7. Conclusion
|
| 192 |
+
|
| 193 |
+
- Summary of contributions
|
| 194 |
+
- Empirical validation of tiering system via benchmark experiments
|
| 195 |
+
- Roadmap: JARVIS EaH computation, NOMAD/AFLOW integration, experimental data, ionic conductivity computation
|
| 196 |
+
- Call for community adoption
|
| 197 |
+
|
| 198 |
+
---
|
| 199 |
+
|
| 200 |
+
## Figures Needed
|
| 201 |
+
|
| 202 |
+
1. **Property distributions** — FE, EaH, BG histograms colored by source (3 panels)
|
| 203 |
+
2. **Quality score calibration** — score bin → validation rate (line plot with confidence bands)
|
| 204 |
+
3. **Cross-source agreement** — MP vs JARVIS FE scatter plot (11,741 overlapping formulas)
|
| 205 |
+
4. **Tier impact** — FE MAE bar chart across tiers (4 bars)
|
| 206 |
+
5. **Benchmark results** — FE MAE across 4 splits, full vs Gold (grouped bar chart)
|
| 207 |
+
6. **Family distribution** — bar chart of 10 families with battery relevance labels
|
| 208 |
+
7. **Battery subset composition** — pie chart or treemap
|
| 209 |
+
|
| 210 |
+
---
|
| 211 |
+
|
| 212 |
+
## Tables Needed
|
| 213 |
+
|
| 214 |
+
1. Source comparison (MP, OQMD, JARVIS — size, properties, license)
|
| 215 |
+
2. Tier system (4 tiers, counts, gate criteria)
|
| 216 |
+
3. Family classification (10 families, criteria, battery relevance)
|
| 217 |
+
4. Benchmark results (8 rows as above)
|
| 218 |
+
5. Comparison with prior work (Scandium vs LeMat-Traj, Matbench, JARVIS)
|
| 219 |
+
6. Dataset statistics per source (mean FE, EaH, BG, quality score)
|
| 220 |
+
7. Cross-source overlap statistics (11,741 formulas, FE MAE by source pair)
|
| 221 |
+
|
| 222 |
+
---
|
| 223 |
+
|
| 224 |
+
## Submission Checklist
|
| 225 |
+
|
| 226 |
+
- [ ] DOI obtained from Zenodo
|
| 227 |
+
- [ ] License conflict resolved (LICENSE_BREAKDOWN.md added)
|
| 228 |
+
- [ ] per-entry `license` field added to dataset
|
| 229 |
+
- [ ] Baseline benchmark results computed (8 experiments)
|
| 230 |
+
- [ ] Related work analyzed against LeMat-Traj, Matbench, JARVIS
|
| 231 |
+
- [ ] Battery/electrolyte methodology documented
|
| 232 |
+
- [ ] Version bumped to v0.1.0
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| 233 |
+
- [ ] Evaluation runner fixed (metrics module created)
|
| 234 |
+
- [ ] Code and data archived for reproducibility
|
| 235 |
+
- [ ] All known issues documented
|