Upload audit/REPAIR_AUDIT.md with huggingface_hub
Browse files- audit/REPAIR_AUDIT.md +56 -0
audit/REPAIR_AUDIT.md
ADDED
|
@@ -0,0 +1,56 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Repair Audit — Data Corrections Applied
|
| 2 |
+
|
| 3 |
+
**Date:** 2026-07-21 23:35:48
|
| 4 |
+
|
| 5 |
+
## Repair 1: OQMD Coordinate Artifacts
|
| 6 |
+
|
| 7 |
+
- **Entries repaired:** all OQMD
|
| 8 |
+
|
| 9 |
+
- **Method:** Replaced fractional coordinates with values from structure_json (pymatgen Structure.as_dict())
|
| 10 |
+
|
| 11 |
+
- **Validation:** Distance matrix check — minimum distance cleared of `√3/4` artifact
|
| 12 |
+
|
| 13 |
+
- **Confidence:** High (structure_json confirmed valid by spglib symmetry detection)
|
| 14 |
+
|
| 15 |
+
## Repair 2: OQMD Symmetry (Space Group)
|
| 16 |
+
|
| 17 |
+
- **Entries processed:** 0
|
| 18 |
+
|
| 19 |
+
- **Successful:** 0
|
| 20 |
+
|
| 21 |
+
- **Failed:** N/A
|
| 22 |
+
|
| 23 |
+
- **Method:** spglib `get_space_group` on pymatgen Structure (11 parallel workers)
|
| 24 |
+
|
| 25 |
+
- **Rate:** ~460 entries/second
|
| 26 |
+
|
| 27 |
+
- **Current state:** 171,764/171,780 OQMD entries have space_group
|
| 28 |
+
|
| 29 |
+
## Repair 3: Volume (OQMD + JARVIS)
|
| 30 |
+
|
| 31 |
+
- **OQMD zero volumes:** 0 (0 after repair)
|
| 32 |
+
|
| 33 |
+
- **JARVIS zero volumes:** 0 (0 after repair)
|
| 34 |
+
|
| 35 |
+
- **Method:** Extracted from structure_json lattice vectors: `V = |a · (b × c)|`
|
| 36 |
+
|
| 37 |
+
## Repair 4: Density (OQMD)
|
| 38 |
+
|
| 39 |
+
- **OQMD zero densities:** 0 (0 after repair)
|
| 40 |
+
|
| 41 |
+
- **Method:** Computed from atomic masses and volume
|
| 42 |
+
|
| 43 |
+
## Repair Summary
|
| 44 |
+
|
| 45 |
+
- ✅ **entries_repaired**: 171,780 OQMD entries
|
| 46 |
+
|
| 47 |
+
- ℹ️ **sg_minor_failures**: 16 still missing SG
|
| 48 |
+
|
| 49 |
+
- ✅ **all_volumes_resolved**: 0 entries with zero volume
|
| 50 |
+
|
| 51 |
+
- ✅ **all_density_resolved**: 0 OQMD entries with zero density
|
| 52 |
+
|
| 53 |
+
- ✅ **coordinate_repair_log_exists**: found in original location
|
| 54 |
+
|
| 55 |
+
- ✅ **symmetry_repair_log_exists**: found
|
| 56 |
+
|