import time from sklearn.manifold import TSNE import seaborn as sns import pandas as pd import numpy as np import matplotlib.patheffects as PathEffects import matplotlib.pyplot as plt import pickle,sys def plot_scatter(x, colors, fileName): # choose a color palette with seaborn. num_classes = len(np.unique(colors)) print(num_classes) palette = np.array(sns.color_palette("hls", num_classes)) # print(palette) # create a scatter plot. f = plt.figure(figsize=(16, 12)) # ax = plt.subplot(aspect='equal') ax = plt.subplot() # sc = ax.scatter(x[:,0], x[:,1], lw=0, s=40, c=df['label'], cmap=plt.cm.get_cmap('Paired')) # sc = ax.scatter(x[:,0], x[:,1], c=palette[colors.astype(np.int)], cmap=plt.cm.get_cmap('Paired')) sc = ax.scatter(x[:, 0], x[:, 1], c=palette[colors.astype(np.int)], cmap=plt.cm.get_cmap('Paired')) plt.xlim(-25, 25) plt.ylim(-25, 25) ax.legend() ax.axis('off') ax.axis('tight') # add the labels for each digit corresponding to the label txts = [] for i in range(num_classes): # Position of each label at median of data points. xtext, ytext = np.median(x[colors == i, :], axis=0) txt = ax.text(xtext, ytext, str(i), fontsize=24) txt.set_path_effects([ PathEffects.Stroke(linewidth=5, foreground="w"), PathEffects.Normal()]) txts.append(txt) ax.grid(True) plt.savefig(fileName + '.pdf', fmt='pdf', bbox_inches='tight') plt.show() def gettSNEResults(features,labels): X = pd.DataFrame(features) Y = pd.DataFrame(labels) #X = X.sample(frac=0.1, random_state=10).reset_index(drop=True) #Y = Y.sample(frac=0.1, random_state=10).reset_index(drop=True) df = X time_start = time.time() tsne = TSNE(random_state=0) tsne_results = tsne.fit_transform(df.values) df['label'] = Y return tsne_results,df['label'] featureFile = sys.argv[1] #eg. desEmbedding.pickle or synthesisFlow.pickle labelFile = sys.argv[2] # designName or synthesisID tSNE_diagName = sys.argv[3] # tSNE file name with open(featureFile,'rb') as f: featureEmbedding = pickle.load(f) with open(labelFile,'rb') as f: outputLabel = pickle.load(f) labelDict = {} labelList = [] for i in range(len(outputLabel)): labelDict[outputLabel[i]] = i labelList.append(i) tsne_F,tsne_Y = gettSNEResults(featureEmbedding,labelList) plot_scatter(tsne_F,tsne_Y,tSNE_diagName) print(labelDict)