Datasets:
Simplify figures and move explanations into the dataset card
Browse files
README.md
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---
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# SpatialDataAgent-DB Public Catalog
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*Left to right: H&E and GFAP from the same Visium section (GSM9721856), Xenium DAPI (GSM9301054), and a CosMx composite (GSM9372712). The GFAP panel displays all 3,416 recorded spots using the existing log1p preview values.*
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Search and inspect the metadata for 12,163 samples, 1,265 published study folders and 635,240,170 spatial observations in the fixed `sda-unified-20261010-v3` snapshot. It includes 8,211 samples with released tissue images.
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## Collection composition
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*Sample counts by platform, image availability, source collection and retained split (n = 12,163; source snapshot: sda-unified-20261010-v3).*
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## Access and reuse
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Browse the public catalog, request access to the [full sample data](https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB), then retrieve H5AD, available TIFF images and JSON metadata. AnnData/Scanpy can read downloaded expression files. Streaming training shards and the Python SDK are planned follow-up outputs.
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assets/dataset-card/v2/01-overview.png
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Git LFS Details
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assets/dataset-card/v2/01-overview.svg
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assets/dataset-card/v2/02-composition.png
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Git LFS Details
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assets/dataset-card/v2/02-composition.svg
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assets/dataset-card/v2/verification.json
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{
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"source_release": "sda-unified-20261010-v3",
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"checks": [
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"Sample denominator: 12,163",
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"Spatial observations: 635,240,170",
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"Unchanged source catalog binding",
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"GFAP preview matches catalog expression SHA256",
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"All 3,416 GFAP spots retained; values and coordinates unchanged",
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"01-overview: labels within canvas []",
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"Platform counts match frozen catalog",
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"Image count: 8,211",
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"Source counts match frozen catalog",
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"Split counts match frozen catalog",
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"02-composition: labels within canvas []"
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],
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"products": [
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{
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"name": "01-overview.png",
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"bytes": 1453502,
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"sha256": "5a1cbd439ee1985a0388b7acb83e5c58fb64859b70f51dc3426108e93676987d"
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},
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{
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"name": "01-overview.svg",
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"bytes": 1855769,
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"sha256": "e472dddc15da9b1336f39ad70e174a0696aaa718c498c32264cd449f4ad83cc4"
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},
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{
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"name": "02-composition.png",
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"bytes": 119478,
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"sha256": "51f48eb451c2cd314ed27a0c0508991f96d4bad3b0a8219ba2ec2e6c5facfb0b"
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},
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{
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"name": "02-composition.svg",
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"bytes": 16611,
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"sha256": "57b0f6efda282e77e823285f0c8bc8ac81f9e937a0b7b31c5277a38345322260"
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}
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],
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"source_figures": "../figures-v1",
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"image_samples": [
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"GSM9721856",
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"GSM9301054",
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"GSM9372712"
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],
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"tissue_pixels_edited": false,
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"generated_tissue_images": false,
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"design_changes": "No overall titles, statistics cards, captions, footnotes or workflow image; explanations live in Markdown.",
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"matplotlib_version": "3.11.2"
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}
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